J4_8VVU_015

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

8VVU|1|ZA|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|ZA|C|98
8VVU|1|ZA|A|99
8VVU|1|ZA|U|100
8VVU|1|ZA|U|101
8VVU|1|ZA|A|102
8VVU|1|ZA|A|103
8VVU|1|ZA|A|104
8VVU|1|ZA|U|105
8VVU|1|ZA|C|106
*
8VVU|1|ZA|G|355
8VVU|1|ZA|C|356
8VVU|1|ZA|C|357
*
8VVU|1|ZA|G|405
8VVU|1|ZA|U|406
8VVU|1|ZA|G|407
8VVU|1|ZA|A|408
8VVU|1|ZA|C|409
*
8VVU|1|ZA|G|431
8VVU|1|ZA|G|432

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain IB

S8

Chain LB

S11

Chain XB

S23