J4_8VVV_006

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|G|3640
8VVV|1|5|A|3641
8VVV|1|5|C|3642
8VVV|1|5|U|3643
8VVV|1|5|G|3644
*
8VVV|1|5|C|3656
8VVV|1|5|A|3657
8VVV|1|5|A|3658
8VVV|1|5|A|3659
8VVV|1|5|G|3660
*
8VVV|1|5|U|3696
8VVV|1|5|G|3697
8VVV|1|5|A|3698
8VVV|1|5|U|3699
8VVV|1|5|U|3700
*
8VVV|1|5|A|3827
8VVV|1|5|U|3828
8VVV|1|5|G|3829
8VVV|1|5|A|3830
8VVV|1|5|A2M|3831
8VVV|1|5|C|3832

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

uL2

Chain n

eL41

Chain p

eL43