J4_8VVV_006
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVV_006 not in the Motif Atlas
- Homologous match to J4_9PN5_006
- Geometric discrepancy: 0.1255
- The information below is about J4_9PN5_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.4
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
8VVV|1|5|G|3640
8VVV|1|5|A|3641
8VVV|1|5|C|3642
8VVV|1|5|U|3643
8VVV|1|5|G|3644
*
8VVV|1|5|C|3656
8VVV|1|5|A|3657
8VVV|1|5|A|3658
8VVV|1|5|A|3659
8VVV|1|5|G|3660
*
8VVV|1|5|U|3696
8VVV|1|5|G|3697
8VVV|1|5|A|3698
8VVV|1|5|U|3699
8VVV|1|5|U|3700
*
8VVV|1|5|A|3827
8VVV|1|5|U|3828
8VVV|1|5|G|3829
8VVV|1|5|A|3830
8VVV|1|5|A2M|3831
8VVV|1|5|C|3832
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain n
- eL41
- Chain p
- eL43
Coloring options: