J4_8VVV_007

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8VVV|1|5|U|3824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|C|3702
8VVV|1|5|U|3703
8VVV|1|5|G|3704
*
8VVV|1|5|C|3758
8VVV|1|5|G|3759
*
8VVV|1|5|C|3777
8VVV|1|5|U|3778
8VVV|1|5|U|3779
8VVV|1|5|A|3780
8VVV|1|5|A|3781
8VVV|1|5|G|3782
8VVV|1|5|G|3783
8VVV|1|5|U|3784
8VVV|1|5|A|3785
8VVV|1|5|G|3786
*
8VVV|1|5|U|3820
8VVV|1|5|G|3821
8VVV|1|5|A|3822
8VVV|1|5|A|3823
8VVV|1|5|U|3824
8VVV|1|5|G|3825

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

uL2

Chain n

eL41