J4_8VVV_007
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8VVV|1|5|U|3824
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVV_007 not in the Motif Atlas
- Homologous match to J4_8GLP_010
- Geometric discrepancy: 0.1988
- The information below is about J4_8GLP_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_21738.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 3
Unit IDs
8VVV|1|5|C|3702
8VVV|1|5|U|3703
8VVV|1|5|G|3704
*
8VVV|1|5|C|3758
8VVV|1|5|G|3759
*
8VVV|1|5|C|3777
8VVV|1|5|U|3778
8VVV|1|5|U|3779
8VVV|1|5|A|3780
8VVV|1|5|A|3781
8VVV|1|5|G|3782
8VVV|1|5|G|3783
8VVV|1|5|U|3784
8VVV|1|5|A|3785
8VVV|1|5|G|3786
*
8VVV|1|5|U|3820
8VVV|1|5|G|3821
8VVV|1|5|A|3822
8VVV|1|5|A|3823
8VVV|1|5|U|3824
8VVV|1|5|G|3825
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain n
- eL41
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