J4_8VVV_011
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8VVV|1|9|A|672, 8VVV|1|9|A|1083, 8VVV|1|9|C|1085, 8VVV|1|9|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|9|A|671
8VVV|1|9|A|672
8VVV|1|9|G|673
*
8VVV|1|9|C|1032
8VVV|1|9|G|1033
8VVV|1|9|A|1034
8VVV|1|9|A|1035
8VVV|1|9|A|1036
8VVV|1|9|G|1037
*
8VVV|1|9|C|1078
8VVV|1|9|C|1079
8VVV|1|9|A|1080
8VVV|1|9|U|1081
8VVV|1|9|A|1082
8VVV|1|9|A|1083
8VVV|1|9|A|1084
8VVV|1|9|C|1085
8VVV|1|9|G|1086
8VVV|1|9|A|1087
8VVV|1|9|U|1088
8VVV|1|9|G|1089
*
8VVV|1|9|U|1160
8VVV|1|9|U|1161
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- uS17
- Chain NN
- uS15
- Chain OO
- uS11
- Chain WW
- uS8
- Chain XX
- uS12
- Chain aa
- eS26
- Chain n
- eL41
- Chain p
- eL43
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