J4_8WHX_007

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WHX_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0525

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8WHX|1|A|G|1989
8WHX|1|A|A|1990
8WHX|1|A|C|1991
8WHX|1|A|U|1992
8WHX|1|A|G|1993
*
8WHX|1|A|C|2005
8WHX|1|A|A|2006
8WHX|1|A|C|2007
8WHX|1|A|A|2008
8WHX|1|A|G|2009
*
8WHX|1|A|U|2044
8WHX|1|A|G|2045
8WHX|1|A|A|2046
8WHX|1|A|C|2047
*
8WHX|1|A|G|2199
8WHX|1|A|U|2200
8WHX|1|A|A|2201
8WHX|1|A|A|2202
8WHX|1|A|C|2203

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain v

30S ribosomal protein S22