J4_8WHY_005

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8WHY|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WHY_005 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0926

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8WHY|1|A|U|1428
8WHY|1|A|C|1429
*
8WHY|1|A|G|1453
8WHY|1|A|G|1454
8WHY|1|A|U|1455
8WHY|1|A|G|1456
8WHY|1|A|A|1457
8WHY|1|A|G|1458
*
8WHY|1|A|C|1519
8WHY|1|A|C|1520
*
8WHY|1|A|G|1815
8WHY|1|A|C|1816
8WHY|1|A|C|1817
8WHY|1|A|C|1818
8WHY|1|A|G|1819
8WHY|1|A|U|1820
8WHY|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23