J4_8WIB_004

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8WIB|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIB_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1035

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8WIB|1|A|G|1425
8WIB|1|A|G|1426
8WIB|1|A|U|1427
8WIB|1|A|U|1428
8WIB|1|A|C|1429
*
8WIB|1|A|G|1453
8WIB|1|A|G|1454
8WIB|1|A|U|1455
8WIB|1|A|G|1456
8WIB|1|A|A|1457
8WIB|1|A|G|1458
*
8WIB|1|A|C|1519
8WIB|1|A|C|1520
*
8WIB|1|A|G|1815
8WIB|1|A|C|1816
8WIB|1|A|C|1817
8WIB|1|A|C|1818
8WIB|1|A|G|1819
8WIB|1|A|U|1820
8WIB|1|A|A|1821
8WIB|1|A|C|1822

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23