J4_8WIB_009

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8WIB|1|A|A|2512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIB_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1117

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

8WIB|1|A|C|2509
8WIB|1|A|A|2510
8WIB|1|A|A|2511
8WIB|1|A|A|2512
8WIB|1|A|G|2513
*
8WIB|1|A|U|2567
8WIB|1|A|U|2568
8WIB|1|A|G|2569
8WIB|1|A|A|2570
8WIB|1|A|C|2571
*
8WIB|1|A|G|2594
8WIB|1|A|G|2595
8WIB|1|A|G|2596
*
8WIB|1|A|C|2605
8WIB|1|A|G|2606
8WIB|1|A|G|2607

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L33A

Chain 8

50S ribosomal protein L35

Chain Z

50S ribosomal protein L27