J4_8WIC_004

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8WIC|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIC_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1035

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|G|1425
8WIC|1|A|G|1426
8WIC|1|A|U|1427
8WIC|1|A|U|1428
8WIC|1|A|C|1429
*
8WIC|1|A|G|1453
8WIC|1|A|G|1454
8WIC|1|A|U|1455
8WIC|1|A|G|1456
8WIC|1|A|A|1457
8WIC|1|A|G|1458
*
8WIC|1|A|C|1519
8WIC|1|A|C|1520
*
8WIC|1|A|G|1815
8WIC|1|A|C|1816
8WIC|1|A|C|1817
8WIC|1|A|C|1818
8WIC|1|A|G|1819
8WIC|1|A|U|1820
8WIC|1|A|A|1821
8WIC|1|A|C|1822

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23