J4_8WIC_009

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8WIC|1|A|A|2512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIC_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1117

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|C|2509
8WIC|1|A|A|2510
8WIC|1|A|A|2511
8WIC|1|A|A|2512
8WIC|1|A|G|2513
*
8WIC|1|A|U|2567
8WIC|1|A|U|2568
8WIC|1|A|G|2569
8WIC|1|A|A|2570
8WIC|1|A|C|2571
*
8WIC|1|A|G|2594
8WIC|1|A|G|2595
8WIC|1|A|G|2596
*
8WIC|1|A|C|2605
8WIC|1|A|G|2606
8WIC|1|A|G|2607

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L33A

Chain 8

50S ribosomal protein L35

Chain Z

50S ribosomal protein L27