J4_8WV1_001

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8WV1|1|A|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WV1_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1525

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8WV1|1|A|C|257
8WV1|1|A|U|258
*
8WV1|1|A|G|397
8WV1|1|A|A|398
8WV1|1|A|G|399
8WV1|1|A|U|400
8WV1|1|A|A|401
8WV1|1|A|C|402
*
8WV1|1|A|G|426
8WV1|1|A|G|427
8WV1|1|A|A|428
8WV1|1|A|A|429
8WV1|1|A|U|430
8WV1|1|A|C|431
8WV1|1|A|U|432
8WV1|1|A|G|433
*
8WV1|1|A|U|448
8WV1|1|A|A|449
8WV1|1|A|A|450
8WV1|1|A|G|451

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain W

Large ribosomal subunit protein bL28