J4_8WV1_010
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 8WV1|1|a|G|1317, 8WV1|1|a|A|1318, 8WV1|1|a|U|1319, 8WV1|1|a|A|1320, 8WV1|1|a|C|1693, 8WV1|1|a|G|1694
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8WV1_010 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.1645
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8WV1|1|a|C|1316
8WV1|1|a|G|1317
8WV1|1|a|A|1318
8WV1|1|a|U|1319
8WV1|1|a|A|1320
8WV1|1|a|A|1321
8WV1|1|a|A|1322
*
8WV1|1|a|U|1340
8WV1|1|a|C|1341
*
8WV1|1|a|G|1692
8WV1|1|a|C|1693
8WV1|1|a|G|1694
8WV1|1|a|C|1695
*
8WV1|1|a|G|2031
8WV1|1|a|G|2032
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain m
- 50S ribosomal protein L17
- Chain r
- 50S ribosomal protein L22
Coloring options: