J4_8WV1_012

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

8WV1|1|a|A|1491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WV1_012 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.244

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8WV1|1|a|G|1490
8WV1|1|a|A|1491
8WV1|1|a|C|1492
*
8WV1|1|a|G|1513
8WV1|1|a|C|1514
*
8WV1|1|a|G|1571
8WV1|1|a|G|1572
*
8WV1|1|a|C|1593
8WV1|1|a|C|1594

Current chains

Chain a

23S rRNA

Nearby chains