J4_8WV1_018
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8WV1|1|a|U|1387
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8WV1_018 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.1467
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8WV1|1|a|U|1359
8WV1|1|a|C|1360
*
8WV1|1|a|G|1384
8WV1|1|a|G|1385
8WV1|1|a|U|1386
8WV1|1|a|U|1387
8WV1|1|a|A|1388
8WV1|1|a|G|1389
*
8WV1|1|a|C|1450
8WV1|1|a|U|1451
*
8WV1|1|a|A|1643
8WV1|1|a|C|1644
8WV1|1|a|C|1645
8WV1|1|a|C|1646
8WV1|1|a|G|1647
8WV1|1|a|U|1648
8WV1|1|a|A|1649
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain x
- Large ribosomal subunit protein uL29
Coloring options: