J4_8WV1_019

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WV1_019 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1967

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8WV1|1|a|G|2655
8WV1|1|a|G|2656
8WV1|1|a|G|2657
8WV1|1|a|C|2658
*
8WV1|1|a|G|2686
8WV1|1|a|A|2687
8WV1|1|a|C|2688
*
8WV1|1|a|G|2744
8WV1|1|a|G|2745
8WV1|1|a|A|2746
8WV1|1|a|A|2747
8WV1|1|a|G|2748
*
8WV1|1|a|C|2782
8WV1|1|a|G|2783
8WV1|1|a|C|2784

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain j

Large ribosomal subunit protein uL14