J4_8XSY_002
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8XSY|1|L5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XSY_002 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1091
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8XSY|1|L5|C|111
8XSY|1|L5|C|112
*
8XSY|1|L5|G|278
8XSY|1|L5|A|279
8XSY|1|L5|G|280
8XSY|1|L5|U|281
8XSY|1|L5|C|282
8XSY|1|L5|G|283
*
8XSY|1|L5|C|304
8XSY|1|L5|A|305
8XSY|1|L5|A|306
8XSY|1|L5|A|307
8XSY|1|L5|G|308
8XSY|1|L5|C|309
8XSY|1|L5|G|310
*
8XSY|1|L5|U|327
8XSY|1|L5|A|328
8XSY|1|L5|A|329
8XSY|1|L5|G|330
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
- Chain Li
- 60S ribosomal protein L36
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