J4_8XXL_001
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8XXL|1|S2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XXL_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0896
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8XXL|1|S2|C|98
8XXL|1|S2|A|99
8XXL|1|S2|U|100
8XXL|1|S2|U|101
8XXL|1|S2|A|102
8XXL|1|S2|A|103
8XXL|1|S2|A|104
8XXL|1|S2|U|105
8XXL|1|S2|C|106
*
8XXL|1|S2|G|355
8XXL|1|S2|C|356
8XXL|1|S2|C|357
*
8XXL|1|S2|G|405
8XXL|1|S2|U|406
8XXL|1|S2|G|407
8XXL|1|S2|A|408
8XXL|1|S2|C|409
*
8XXL|1|S2|G|431
8XXL|1|S2|G|432
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
Coloring options: