J4_8XZ3_004

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8XZ3|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8XZ3_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1073

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8XZ3|1|A|G|1425
8XZ3|1|A|G|1426
8XZ3|1|A|U|1427
8XZ3|1|A|U|1428
8XZ3|1|A|C|1429
*
8XZ3|1|A|G|1453
8XZ3|1|A|G|1454
8XZ3|1|A|U|1455
8XZ3|1|A|G|1456
8XZ3|1|A|A|1457
8XZ3|1|A|G|1458
*
8XZ3|1|A|C|1519
8XZ3|1|A|C|1520
*
8XZ3|1|A|G|1815
8XZ3|1|A|C|1816
8XZ3|1|A|C|1817
8XZ3|1|A|C|1818
8XZ3|1|A|G|1819
8XZ3|1|A|U|1820
8XZ3|1|A|A|1821
8XZ3|1|A|C|1822

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain d

Large ribosomal subunit protein bL34