J4_8XZ3_007
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XZ3_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0852
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8XZ3|1|A|G|1989
8XZ3|1|A|A|1990
8XZ3|1|A|C|1991
8XZ3|1|A|U|1992
8XZ3|1|A|G|1993
*
8XZ3|1|A|C|2005
8XZ3|1|A|A|2006
8XZ3|1|A|C|2007
8XZ3|1|A|A|2008
8XZ3|1|A|G|2009
*
8XZ3|1|A|U|2044
8XZ3|1|A|G|2045
8XZ3|1|A|A|2046
8XZ3|1|A|C|2047
*
8XZ3|1|A|G|2199
8XZ3|1|A|U|2200
8XZ3|1|A|A|2201
8XZ3|1|A|A|2202
8XZ3|1|A|C|2203
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
Coloring options: