J4_8XZ3_009
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8XZ3|1|A|A|2512
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XZ3_009 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1268
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8XZ3|1|A|C|2509
8XZ3|1|A|A|2510
8XZ3|1|A|A|2511
8XZ3|1|A|A|2512
8XZ3|1|A|G|2513
*
8XZ3|1|A|U|2567
8XZ3|1|A|U|2568
8XZ3|1|A|G|2569
8XZ3|1|A|A|2570
8XZ3|1|A|C|2571
*
8XZ3|1|A|G|2594
8XZ3|1|A|G|2595
8XZ3|1|A|G|2596
*
8XZ3|1|A|C|2605
8XZ3|1|A|G|2606
8XZ3|1|A|G|2607
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL18
- Chain X
- Large ribosomal subunit protein bL27
- Chain c
- Large ribosomal subunit protein bL33A
- Chain e
- Large ribosomal subunit protein bL35
Coloring options: