J4_8Y38_001

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8Y38|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y38_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1444

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8Y38|1|A|C|271
8Y38|1|A|C|272
*
8Y38|1|A|G|416
8Y38|1|A|A|417
8Y38|1|A|G|418
8Y38|1|A|U|419
8Y38|1|A|A|420
8Y38|1|A|C|421
*
8Y38|1|A|G|445
8Y38|1|A|G|446
8Y38|1|A|A|447
8Y38|1|A|A|448
8Y38|1|A|U|449
8Y38|1|A|C|450
8Y38|1|A|U|451
8Y38|1|A|G|452
*
8Y38|1|A|U|467
8Y38|1|A|A|468
8Y38|1|A|A|469
8Y38|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein bL28