J4_8Y39_007

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y39_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0849

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8Y39|1|A|G|1799
8Y39|1|A|A|1800
8Y39|1|A|C|1801
8Y39|1|A|U|1802
8Y39|1|A|G|1803
*
8Y39|1|A|C|1815
8Y39|1|A|A|1816
8Y39|1|A|C|1817
8Y39|1|A|A|1818
8Y39|1|A|G|1819
*
8Y39|1|A|U|1854
8Y39|1|A|G|1855
8Y39|1|A|A|1856
8Y39|1|A|C|1857
*
8Y39|1|A|G|2002
8Y39|1|A|U|2003
8Y39|1|A|A|2004
8Y39|1|A|A|2005
8Y39|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2