J4_8Y5N_001

3D structure

PDB id

8Y5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 3 containing mRNA with 21-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8Y5N|1|1|A|404, 8Y5N|1|1|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y5N_001 not in the Motif Atlas

Homologous match to J4_8B0X_004

Geometric discrepancy: 0.207

The information below is about J4_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8Y5N|1|1|C|268
8Y5N|1|1|C|269
*
8Y5N|1|1|G|370
8Y5N|1|1|A|371
8Y5N|1|1|G|372
8Y5N|1|1|U|373
8Y5N|1|1|A|374
8Y5N|1|1|G|375
*
8Y5N|1|1|U|399
8Y5N|1|1|G|400
8Y5N|1|1|A|401
8Y5N|1|1|A|402
8Y5N|1|1|U|403
8Y5N|1|1|A|404
8Y5N|1|1|U|405
8Y5N|1|1|G|406
*
8Y5N|1|1|C|421
8Y5N|1|1|A|422
8Y5N|1|1|A|423
8Y5N|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28