J4_8Y5O_013
3D structure
- PDB id
- 8Y5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8Y5O|1|3|C|576, 8Y5O|1|3|A|815, 8Y5O|1|3|C|817, 8Y5O|1|3|A|819
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Y5O_013 not in the Motif Atlas
- Homologous match to J4_8B0X_003
- Geometric discrepancy: 0.1426
- The information below is about J4_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.3
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
8Y5O|1|3|G|575
8Y5O|1|3|C|576
8Y5O|1|3|G|577
*
8Y5O|1|3|C|764
8Y5O|1|3|G|765
8Y5O|1|3|A|766
8Y5O|1|3|A|767
8Y5O|1|3|A|768
8Y5O|1|3|G|769
*
8Y5O|1|3|C|810
8Y5O|1|3|C|811
8Y5O|1|3|G|812
8Y5O|1|3|U|813
8Y5O|1|3|A|814
8Y5O|1|3|A|815
8Y5O|1|3|A|816
8Y5O|1|3|C|817
8Y5O|1|3|G|818
8Y5O|1|3|A|819
8Y5O|1|3|U|820
8Y5O|1|3|G|821
*
8Y5O|1|3|C|879
8Y5O|1|3|C|880
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S8
- Chain Q
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
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