J4_8Y5P_003

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8Y5P|1|1|G|1271, 8Y5P|1|1|A|1272, 8Y5P|1|1|U|1273, 8Y5P|1|1|A|1274, 8Y5P|1|1|A|1275, 8Y5P|1|1|C|1646, 8Y5P|1|1|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5P|1|1|C|1270
8Y5P|1|1|G|1271
8Y5P|1|1|A|1272
8Y5P|1|1|U|1273
8Y5P|1|1|A|1274
8Y5P|1|1|A|1275
8Y5P|1|1|A|1276
*
8Y5P|1|1|U|1294
8Y5P|1|1|C|1295
*
8Y5P|1|1|G|1645
8Y5P|1|1|C|1646
8Y5P|1|1|U|1647
8Y5P|1|1|U|1648
*
8Y5P|1|1|A|2009
8Y5P|1|1|G|2010

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22