J4_8Y5Q_012

3D structure

PDB id

8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8Y5Q|1|3|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5Q|1|3|G|142
8Y5Q|1|3|A|143
8Y5Q|1|3|G|144
*
8Y5Q|1|3|C|178
8Y5Q|1|3|A|179
8Y5Q|1|3|U|180
8Y5Q|1|3|A|181
8Y5Q|1|3|A|182
8Y5Q|1|3|C|183
8Y5Q|1|3|G|184
*
8Y5Q|1|3|C|193
8Y5Q|1|3|C|194
8Y5Q|1|3|A|195
8Y5Q|1|3|A|196
8Y5Q|1|3|A|197
8Y5Q|1|3|G|198
*
8Y5Q|1|3|U|219
8Y5Q|1|3|G|220
8Y5Q|1|3|C|221

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20