J4_8Y5S_011

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8Y5S|1|3|C|183, 8Y5S|1|3|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5S|1|3|G|142
8Y5S|1|3|A|143
8Y5S|1|3|G|144
*
8Y5S|1|3|C|178
8Y5S|1|3|A|179
8Y5S|1|3|U|180
8Y5S|1|3|A|181
8Y5S|1|3|A|182
8Y5S|1|3|C|183
8Y5S|1|3|G|184
*
8Y5S|1|3|C|193
8Y5S|1|3|C|194
8Y5S|1|3|A|195
8Y5S|1|3|A|196
8Y5S|1|3|A|197
8Y5S|1|3|G|198
*
8Y5S|1|3|U|219
8Y5S|1|3|G|220
8Y5S|1|3|C|221

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20