J4_8YDH_009

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDH|1|1|G|2643
8YDH|1|1|G|2644
8YDH|1|1|G|2645
8YDH|1|1|C|2646
*
8YDH|1|1|G|2674
8YDH|1|1|A|2675
8YDH|1|1|C|2676
*
8YDH|1|1|G|2731
8YDH|1|1|G|2732
8YDH|1|1|A|2733
8YDH|1|1|A|2734
8YDH|1|1|G|2735
*
8YDH|1|1|U|2769
8YDH|1|1|G|2770
8YDH|1|1|C|2771

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13

Chain k

50S ribosomal protein L14