J4_8YDH_011

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8YDH|1|3|C|183, 8YDH|1|3|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDH|1|3|G|142
8YDH|1|3|A|143
8YDH|1|3|G|144
*
8YDH|1|3|C|178
8YDH|1|3|A|179
8YDH|1|3|U|180
8YDH|1|3|A|181
8YDH|1|3|A|182
8YDH|1|3|C|183
8YDH|1|3|G|184
*
8YDH|1|3|C|193
8YDH|1|3|C|194
8YDH|1|3|A|195
8YDH|1|3|A|196
8YDH|1|3|A|197
8YDH|1|3|G|198
*
8YDH|1|3|U|219
8YDH|1|3|G|220
8YDH|1|3|C|221

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20