J4_8YLR_002
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8YLR|1|2|A|623, 8YLR|1|2|A|1026, 8YLR|1|2|C|1028, 8YLR|1|2|U|1029, 8YLR|1|2|A|1030, 8YLR|1|2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YLR_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1105
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YLR|1|2|A|622
8YLR|1|2|A|623
8YLR|1|2|G|624
*
8YLR|1|2|C|975
8YLR|1|2|G|976
8YLR|1|2|A|977
8YLR|1|2|A|978
8YLR|1|2|A|979
8YLR|1|2|G|980
*
8YLR|1|2|C|1021
8YLR|1|2|C|1022
8YLR|1|2|A|1023
8YLR|1|2|U|1024
8YLR|1|2|A|1025
8YLR|1|2|A|1026
8YLR|1|2|A|1027
8YLR|1|2|C|1028
8YLR|1|2|U|1029
8YLR|1|2|A|1030
8YLR|1|2|U|1031
8YLR|1|2|G|1032
*
8YLR|1|2|U|1103
8YLR|1|2|U|1104
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Se
- Small ribosomal subunit protein eS26A
- Chain p
- Large ribosomal subunit protein eL41A
- Chain r
- Large ribosomal subunit protein eL43A
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