J4_8YLR_007

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CUUAAC*GGAAGAG*UC

Length

17 nucleotides

Bulged bases

8YLR|1|A|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|G|1674
8YLR|1|A|G|1675
*
8YLR|1|A|C|1693
8YLR|1|A|U|1694
8YLR|1|A|U|1695
8YLR|1|A|A|1696
8YLR|1|A|A|1697
8YLR|1|A|C|1698
*
8YLR|1|A|G|1747
8YLR|1|A|G|1748
8YLR|1|A|A|1749
8YLR|1|A|A|1750
8YLR|1|A|G|1751
8YLR|1|A|A|1752
8YLR|1|A|G|1753
*
8YLR|1|A|U|1772
8YLR|1|A|C|1773

Current chains

Chain A

25S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein eL22A

Chain i

Large ribosomal subunit protein eL34A

Chain m

Large ribosomal subunit protein eL38