J4_8YLR_011
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YLR_011 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.1351
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_37757.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|A|U|3010
8YLR|1|A|A|3011
8YLR|1|A|A|3012
*
8YLR|1|A|U|3042
8YLR|1|A|C|3043
*
8YLR|1|A|G|3098
8YLR|1|A|C|3099
8YLR|1|A|U|3100
*
8YLR|1|A|A|3134
8YLR|1|A|U|3135
8YLR|1|A|G|3136
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain X
- Large ribosomal subunit protein uL14A
Coloring options: