J4_8YLR_015

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

8YLR|1|A|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YLR_015 not in the Motif Atlas

Homologous match to J4_8CRE_008

Geometric discrepancy: 0.1701

The information below is about J4_8CRE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8YLR|1|A|C|2654
8YLR|1|A|U|2655
8YLR|1|A|A|2656
8YLR|1|A|A|2657
8YLR|1|A|G|2658
*
8YLR|1|A|U|2712
8YLR|1|A|U|2713
8YLR|1|A|G|2714
8YLR|1|A|A|2715
8YLR|1|A|U|2716
*
8YLR|1|A|A|2740
8YLR|1|A|C|2741
8YLR|1|A|C|2742
*
8YLR|1|A|G|2751
8YLR|1|A|U|2752
8YLR|1|A|G|2753

Current chains

Chain A

25S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein eL21A

Chain d

Large ribosomal subunit protein eL29

Chain q

Large ribosomal subunit protein eL42A