3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8YUO_013 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0455
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8YUO|1|a|A|1772
8YUO|1|a|A|1773
8YUO|1|a|C|1774
8YUO|1|a|U|1775
8YUO|1|a|G|1776
*
8YUO|1|a|C|1788
8YUO|1|a|A|1789
8YUO|1|a|C|1790
8YUO|1|a|A|1791
8YUO|1|a|G|1792
*
8YUO|1|a|U|1827
8YUO|1|a|G|1828
8YUO|1|a|A|1829
8YUO|1|a|C|1830
*
8YUO|1|a|G|1975
8YUO|1|a|U|1976
8YUO|1|a|A|1977
8YUO|1|a|A|1978
8YUO|1|a|U|1979

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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