J4_8YUQ_013

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUQ_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0412

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8YUQ|1|a|A|1772
8YUQ|1|a|A|1773
8YUQ|1|a|C|1774
8YUQ|1|a|U|1775
8YUQ|1|a|G|1776
*
8YUQ|1|a|C|1788
8YUQ|1|a|A|1789
8YUQ|1|a|C|1790
8YUQ|1|a|A|1791
8YUQ|1|a|G|1792
*
8YUQ|1|a|U|1827
8YUQ|1|a|G|1828
8YUQ|1|a|A|1829
8YUQ|1|a|C|1830
*
8YUQ|1|a|G|1975
8YUQ|1|a|U|1976
8YUQ|1|a|A|1977
8YUQ|1|a|A|1978
8YUQ|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2