J4_8YUS_013

3D structure

PDB id

8YUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUS_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0484

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8YUS|1|a|A|1772
8YUS|1|a|A|1773
8YUS|1|a|C|1774
8YUS|1|a|U|1775
8YUS|1|a|G|1776
*
8YUS|1|a|C|1788
8YUS|1|a|A|1789
8YUS|1|a|C|1790
8YUS|1|a|A|1791
8YUS|1|a|G|1792
*
8YUS|1|a|U|1827
8YUS|1|a|G|1828
8YUS|1|a|A|1829
8YUS|1|a|C|1830
*
8YUS|1|a|G|1975
8YUS|1|a|U|1976
8YUS|1|a|A|1977
8YUS|1|a|A|1978
8YUS|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2