J4_8Z71_003
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8Z71|1|A|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Z71_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1471
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8Z71|1|A|U|112
8Z71|1|A|C|113
*
8Z71|1|A|G|267
8Z71|1|A|A|268
8Z71|1|A|G|269
8Z71|1|A|U|270
8Z71|1|A|C|271
8Z71|1|A|G|272
*
8Z71|1|A|C|293
8Z71|1|A|U|294
8Z71|1|A|A|295
8Z71|1|A|A|296
8Z71|1|A|G|297
8Z71|1|A|U|298
8Z71|1|A|G|299
*
8Z71|1|A|U|316
8Z71|1|A|A|317
8Z71|1|A|A|318
8Z71|1|A|A|319
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain j
- Large ribosomal subunit protein uL29A
- Chain k
- Large ribosomal subunit protein eL36A
Coloring options: