J4_8ZEJ_009

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8ZEJ|1|b|U|653, 8ZEJ|1|b|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZEJ|1|b|C|601
8ZEJ|1|b|A|602
8ZEJ|1|b|A|603
8ZEJ|1|b|G|604
*
8ZEJ|1|b|C|624
8ZEJ|1|b|G|625
8ZEJ|1|b|A|626
8ZEJ|1|b|A|627
8ZEJ|1|b|G|628
*
8ZEJ|1|b|C|635
8ZEJ|1|b|G|636
8ZEJ|1|b|A|637
8ZEJ|1|b|G|638
*
8ZEJ|1|b|C|650
8ZEJ|1|b|G|651
8ZEJ|1|b|U|652
8ZEJ|1|b|U|653
8ZEJ|1|b|A|654
8ZEJ|1|b|A|655
8ZEJ|1|b|G|656

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain m

50S ribosomal protein L15