J4_8ZEJ_010
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8ZEJ|1|b|G|1271, 8ZEJ|1|b|A|1272, 8ZEJ|1|b|U|1273, 8ZEJ|1|b|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZEJ_010 not in the Motif Atlas
- Homologous match to J4_8B0X_007
- Geometric discrepancy: 0.1026
- The information below is about J4_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
8ZEJ|1|b|C|1270
8ZEJ|1|b|G|1271
8ZEJ|1|b|A|1272
8ZEJ|1|b|U|1273
8ZEJ|1|b|A|1274
8ZEJ|1|b|A|1275
8ZEJ|1|b|A|1276
*
8ZEJ|1|b|U|1294
8ZEJ|1|b|C|1295
*
8ZEJ|1|b|G|1645
8ZEJ|1|b|C|1646
8ZEJ|1|b|U|1647
8ZEJ|1|b|U|1648
*
8ZEJ|1|b|A|2009
8ZEJ|1|b|G|2010
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain o
- 50S ribosomal protein L17
- Chain t
- 50S ribosomal protein L22
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