J4_8ZFG_005

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8ZFG|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFG_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2629

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8ZFG|1|a|C|268
8ZFG|1|a|C|269
*
8ZFG|1|a|G|370
8ZFG|1|a|A|371
8ZFG|1|a|G|372
8ZFG|1|a|U|373
8ZFG|1|a|A|374
8ZFG|1|a|G|375
*
8ZFG|1|a|U|399
8ZFG|1|a|G|400
8ZFG|1|a|A|401
8ZFG|1|a|A|402
8ZFG|1|a|U|403
8ZFG|1|a|A|404
8ZFG|1|a|U|405
8ZFG|1|a|G|406
*
8ZFG|1|a|C|421
8ZFG|1|a|A|422
8ZFG|1|a|A|423
8ZFG|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28