J4_8ZGR_002

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZGR_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1317

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8ZGR|1|LA|C|185
8ZGR|1|LA|U|186
8ZGR|1|LA|A|187
8ZGR|1|LA|U|188
8ZGR|1|LA|G|189
*
8ZGR|1|LA|C|205
8ZGR|1|LA|G|206
8ZGR|1|LA|U|207
8ZGR|1|LA|C|208
*
8ZGR|1|LA|G|212
8ZGR|1|LA|A|213
8ZGR|1|LA|G|214
*
8ZGR|1|LA|C|226
8ZGR|1|LA|G|227
8ZGR|1|LA|U|228
8ZGR|1|LA|G|229
8ZGR|1|LA|U|230
8ZGR|1|LA|G|231

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A