J4_8ZGR_004
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8ZGR|1|LA|U|1522
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGR_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0512
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZGR|1|LA|G|1491
8ZGR|1|LA|G|1492
8ZGR|1|LA|U|1493
8ZGR|1|LA|U|1494
8ZGR|1|LA|C|1495
*
8ZGR|1|LA|G|1519
8ZGR|1|LA|G|1520
8ZGR|1|LA|U|1521
8ZGR|1|LA|U|1522
8ZGR|1|LA|A|1523
8ZGR|1|LA|G|1524
*
8ZGR|1|LA|C|1613
8ZGR|1|LA|C|1614
*
8ZGR|1|LA|G|1828
8ZGR|1|LA|G|1829
8ZGR|1|LA|U|1830
8ZGR|1|LA|C|1831
8ZGR|1|LA|G|1832
8ZGR|1|LA|U|1833
8ZGR|1|LA|A|1834
8ZGR|1|LA|C|1835
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain Lm
- Large ribosomal subunit protein eL38
- Chain Ln
- Large ribosomal subunit protein eL39
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