J4_8ZGR_007

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8ZGR|1|LA|U|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZGR_007 not in the Motif Atlas

Homologous match to J4_8CRE_007

Geometric discrepancy: 0.1008

The information below is about J4_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_63658.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

1

Unit IDs

8ZGR|1|LA|C|2191
8ZGR|1|LA|U|2192
8ZGR|1|LA|G|2193
*
8ZGR|1|LA|C|2247
8ZGR|1|LA|G|2248
*
8ZGR|1|LA|C|2266
8ZGR|1|LA|U|2267
8ZGR|1|LA|U|2268
8ZGR|1|LA|A|2269
8ZGR|1|LA|A|2270
8ZGR|1|LA|G|2271
8ZGR|1|LA|G|2272
8ZGR|1|LA|U|2273
8ZGR|1|LA|A|2274
8ZGR|1|LA|G|2275
*
8ZGR|1|LA|U|2309
8ZGR|1|LA|G|2310
8ZGR|1|LA|A|2311
8ZGR|1|LA|A|2312
8ZGR|1|LA|U|2313
8ZGR|1|LA|G|2314

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Lp

Large ribosomal subunit protein eL41A

Chain S2

Small subunit ribosomal RNA; SSU rRNA