J4_8ZGY_003

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

8ZGY|1|LA|A|1451, 8ZGY|1|LA|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZGY_003 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.0788

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_87855.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|C|1450
8ZGY|1|LA|A|1451
8ZGY|1|LA|A|1452
8ZGY|1|LA|A|1453
8ZGY|1|LA|U|1454
8ZGY|1|LA|A|1455
8ZGY|1|LA|U|1456
*
8ZGY|1|LA|A|1474
8ZGY|1|LA|G|1475
*
8ZGY|1|LA|U|1876
8ZGY|1|LA|G|1877
8ZGY|1|LA|A|1878
8ZGY|1|LA|U|1879
*
8ZGY|1|LA|A|2351
8ZGY|1|LA|G|2352

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LR

Large ribosomal subunit protein uL22A

Chain LT

Large ribosomal subunit protein eL19A

Chain Lf

Large ribosomal subunit protein eL31A