J4_8ZGY_006
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGY_006 not in the Motif Atlas
- Homologous match to J4_8CRE_006
- Geometric discrepancy: 0.05
- The information below is about J4_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZGY|1|LA|G|2129
8ZGY|1|LA|A|2130
8ZGY|1|LA|C|2131
8ZGY|1|LA|U|2132
8ZGY|1|LA|G|2133
*
8ZGY|1|LA|C|2145
8ZGY|1|LA|A|2146
8ZGY|1|LA|U|2147
8ZGY|1|LA|A|2148
8ZGY|1|LA|G|2149
*
8ZGY|1|LA|U|2185
8ZGY|1|LA|G|2186
8ZGY|1|LA|A|2187
8ZGY|1|LA|U|2188
8ZGY|1|LA|U|2189
*
8ZGY|1|LA|A|2316
8ZGY|1|LA|U|2317
8ZGY|1|LA|U|2318
8ZGY|1|LA|A|2319
8ZGY|1|LA|A|2320
8ZGY|1|LA|C|2321
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain Lr
- Large ribosomal subunit protein eL43A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: