J4_8ZGY_007
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8ZGY|1|LA|U|2268, 8ZGY|1|LA|U|2313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGY_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1301
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8ZGY|1|LA|C|2191
8ZGY|1|LA|U|2192
8ZGY|1|LA|G|2193
*
8ZGY|1|LA|C|2247
8ZGY|1|LA|G|2248
*
8ZGY|1|LA|C|2266
8ZGY|1|LA|U|2267
8ZGY|1|LA|U|2268
8ZGY|1|LA|A|2269
8ZGY|1|LA|A|2270
8ZGY|1|LA|G|2271
8ZGY|1|LA|G|2272
8ZGY|1|LA|U|2273
8ZGY|1|LA|A|2274
8ZGY|1|LA|G|2275
*
8ZGY|1|LA|U|2309
8ZGY|1|LA|G|2310
8ZGY|1|LA|A|2311
8ZGY|1|LA|A|2312
8ZGY|1|LA|U|2313
8ZGY|1|LA|G|2314
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Tb
- Transfer RNA; tRNA
Coloring options: