J4_8ZGY_008
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 8ZGY|1|LA|A|2656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGY_008 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.0592
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZGY|1|LA|C|2653
8ZGY|1|LA|U|2654
8ZGY|1|LA|A|2655
8ZGY|1|LA|A|2656
8ZGY|1|LA|G|2657
*
8ZGY|1|LA|U|2711
8ZGY|1|LA|U|2712
8ZGY|1|LA|G|2713
8ZGY|1|LA|A|2714
8ZGY|1|LA|U|2715
*
8ZGY|1|LA|A|2739
8ZGY|1|LA|C|2740
8ZGY|1|LA|C|2741
*
8ZGY|1|LA|G|2750
8ZGY|1|LA|U|2751
8ZGY|1|LA|G|2752
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LG
- Large ribosomal subunit protein uL18
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain Lq
- Large ribosomal subunit protein eL42A
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