J4_8ZGY_009

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZGY_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0749

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|U|3009
8ZGY|1|LA|A|3010
8ZGY|1|LA|A|3011
*
8ZGY|1|LA|U|3041
8ZGY|1|LA|C|3042
*
8ZGY|1|LA|G|3097
8ZGY|1|LA|C|3098
8ZGY|1|LA|U|3099
*
8ZGY|1|LA|A|3133
8ZGY|1|LA|U|3134
8ZGY|1|LA|G|3135

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LQ

Large ribosomal subunit protein uL13A

Chain LX

Large ribosomal subunit protein uL14A