3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACUAUG*UU
Length
23 nucleotides
Bulged bases
8ZGY|1|S2|A|623, 8ZGY|1|S2|A|1026, 8ZGY|1|S2|C|1028, 8ZGY|1|S2|U|1029, 8ZGY|1|S2|A|1030, 8ZGY|1|S2|U|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGY|1|S2|A|622
8ZGY|1|S2|A|623
8ZGY|1|S2|G|624
*
8ZGY|1|S2|C|975
8ZGY|1|S2|G|976
8ZGY|1|S2|A|977
8ZGY|1|S2|A|978
8ZGY|1|S2|A|979
8ZGY|1|S2|G|980
*
8ZGY|1|S2|C|1021
8ZGY|1|S2|C|1022
8ZGY|1|S2|A|1023
8ZGY|1|S2|U|1024
8ZGY|1|S2|A|1025
8ZGY|1|S2|A|1026
8ZGY|1|S2|A|1027
8ZGY|1|S2|C|1028
8ZGY|1|S2|U|1029
8ZGY|1|S2|A|1030
8ZGY|1|S2|U|1031
8ZGY|1|S2|G|1032
*
8ZGY|1|S2|U|1103
8ZGY|1|S2|U|1104

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain Lp
Large ribosomal subunit protein eL41A
Chain SX
Small ribosomal subunit protein uS17A
Chain SY
Small ribosomal subunit protein uS15
Chain SZ
Small ribosomal subunit protein uS11B
Chain Sb
Small ribosomal subunit protein uS8A
Chain Sc
Small ribosomal subunit protein uS12A
Chain Se
Small ribosomal subunit protein eS26B

Coloring options:

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