J4_8ZH3_007
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8ZH3|1|LA|U|2269, 8ZH3|1|LA|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZH3_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1116
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZH3|1|LA|C|2192
8ZH3|1|LA|U|2193
8ZH3|1|LA|G|2194
*
8ZH3|1|LA|C|2248
8ZH3|1|LA|G|2249
*
8ZH3|1|LA|C|2267
8ZH3|1|LA|U|2268
8ZH3|1|LA|U|2269
8ZH3|1|LA|A|2270
8ZH3|1|LA|A|2271
8ZH3|1|LA|G|2272
8ZH3|1|LA|G|2273
8ZH3|1|LA|U|2274
8ZH3|1|LA|A|2275
8ZH3|1|LA|G|2276
*
8ZH3|1|LA|U|2310
8ZH3|1|LA|G|2311
8ZH3|1|LA|A|2312
8ZH3|1|LA|A|2313
8ZH3|1|LA|U|2314
8ZH3|1|LA|G|2315
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Tb
- Transfer RNA; tRNA
Coloring options: